Variant report
Variant | rs2068854 |
---|---|
Chromosome Location | chr2:142575571-142575572 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:142536364..142538824-chr2:142574055..142576511,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10185119 | 0.93[JPT][hapmap] |
rs1036399 | 0.93[JPT][hapmap] |
rs12691622 | 0.93[JPT][hapmap] |
rs13416257 | 0.87[CHB][hapmap];0.89[YRI][hapmap] |
rs1369536 | 0.93[JPT][hapmap] |
rs16847120 | 0.87[CHB][hapmap];0.89[YRI][hapmap] |
rs16847336 | 0.90[YRI][hapmap] |
rs1975286 | 0.85[CHB][hapmap] |
rs2437293 | 1.00[JPT][hapmap] |
rs352979 | 0.82[CHB][hapmap];0.93[JPT][hapmap] |
rs352980 | 0.82[CHB][hapmap];0.93[JPT][hapmap] |
rs352981 | 0.93[JPT][hapmap] |
rs352983 | 1.00[JPT][hapmap] |
rs352985 | 0.93[JPT][hapmap] |
rs352987 | 0.93[JPT][hapmap] |
rs6429925 | 0.93[JPT][hapmap] |
rs6429926 | 0.93[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834394 | chr2:142430225-142593264 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv875249 | chr2:142527100-142614345 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
4 | nsv875250 | chr2:142540240-142614345 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
5 | nsv1010008 | chr2:142574406-142606021 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
No data |