Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1009398	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10183908	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10193397	0.84[CEU][hapmap]
rs10460250	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10496896	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10496898	0.95[CHB][hapmap]
rs11679158	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs13416257	0.84[CHB][hapmap]
rs1437345	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs1595318	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs16847120	0.84[CHB][hapmap]
rs1876595	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1898425	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2009263	0.92[ASN][1000 genomes]
rs2068854	0.85[CHB][hapmap]
rs2196597	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2381153	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs28529494	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4996425	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6720157	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs752451	0.92[ASN][1000 genomes]
rs7558916	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7591783	0.94[CHB][hapmap]
rs7594617	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7598314	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs974974	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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