Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142519003..142520660-chr2:142522253..142524916,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1009398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10183908	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10193397	0.85[CEU][hapmap]
rs10460250	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10496896	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10496898	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs13416257	0.91[CHB][hapmap]
rs1437345	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1595318	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16847120	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs1876595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1898425	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1975286	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2009263	0.95[ASN][1000 genomes]
rs2196597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2381153	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs28529494	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4996425	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6711195	0.83[ASN][1000 genomes]
rs6720157	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs752451	0.95[ASN][1000 genomes]
rs7558916	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7591783	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7594617	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7598314	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs974974	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv459663	chr2:142509570-142568465	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv583236	chr2:142509570-142568465	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1004379	chr2:142514657-142547597	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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