Variant report
| Variant | rs10193397 |
|---|---|
| Chromosome Location | chr2:142538872-142538873 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:46)
| rs_ID | r2[population] |
|---|---|
| rs1008830 | 0.85[CHB][hapmap];0.87[JPT][hapmap] |
| rs10165118 | 0.91[CHB][hapmap] |
| rs10183908 | 0.81[CEU][hapmap] |
| rs10195141 | 1.00[CHB][hapmap] |
| rs10460250 | 0.85[CEU][hapmap] |
| rs10496897 | 1.00[CHB][hapmap];0.83[JPT][hapmap] |
| rs10928123 | 1.00[CHB][hapmap];0.84[JPT][hapmap] |
| rs11679158 | 0.85[CEU][hapmap] |
| rs12474491 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12474567 | 1.00[CHB][hapmap] |
| rs12612082 | 1.00[CHB][hapmap];0.87[JPT][hapmap] |
| rs12612242 | 0.81[ASN][1000 genomes] |
| rs12616665 | 1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12616779 | 0.81[ASN][1000 genomes] |
| rs12990449 | 1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs13034371 | 0.81[ASN][1000 genomes] |
| rs13412865 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1567305 | 0.81[ASN][1000 genomes] |
| rs1567306 | 0.81[ASN][1000 genomes] |
| rs1567307 | 0.81[ASN][1000 genomes] |
| rs1567308 | 0.81[ASN][1000 genomes] |
| rs1595318 | 0.89[CEU][hapmap] |
| rs16847091 | 1.00[CHB][hapmap] |
| rs16847244 | 0.95[CHB][hapmap];0.83[JPT][hapmap] |
| rs16847247 | 0.95[CHB][hapmap];0.96[JPT][hapmap] |
| rs1866026 | 0.95[CHB][hapmap] |
| rs1866027 | 0.95[CHB][hapmap] |
| rs1975286 | 0.84[CEU][hapmap] |
| rs2048206 | 0.80[CHB][hapmap];0.82[JPT][hapmap] |
| rs2164697 | 0.81[ASN][1000 genomes] |
| rs2164699 | 0.81[ASN][1000 genomes] |
| rs2217964 | 0.90[CHB][hapmap];0.85[JPT][hapmap] |
| rs2217965 | 1.00[CHB][hapmap] |
| rs2890600 | 0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs34527764 | 1.00[CHB][hapmap];0.87[JPT][hapmap] |
| rs3856362 | 1.00[CHB][hapmap] |
| rs4352182 | 0.81[ASN][1000 genomes] |
| rs4622655 | 1.00[CHB][hapmap];0.87[JPT][hapmap] |
| rs4954923 | 1.00[CHB][hapmap] |
| rs6720157 | 0.81[CEU][hapmap] |
| rs6759610 | 1.00[CHB][hapmap];0.87[JPT][hapmap] |
| rs7425972 | 1.00[CHB][hapmap];0.87[JPT][hapmap] |
| rs7558916 | 0.81[CEU][hapmap] |
| rs7594617 | 0.85[CEU][hapmap] |
| rs972485 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs974973 | 1.00[CHB][hapmap];0.83[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834394 | chr2:142430225-142593264 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv459663 | chr2:142509570-142568465 | Weak transcription Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 4 | nsv583236 | chr2:142509570-142568465 | Weak transcription Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv1004379 | chr2:142514657-142547597 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv875246 | chr2:142527100-142568465 | Weak transcription Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 7 | nsv875247 | chr2:142527100-142569099 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 8 | nsv875248 | chr2:142527100-142572590 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 9 | nsv875249 | chr2:142527100-142614345 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
