Variant report

Variant	rs2217964
Chromosome Location	chr2:142537233-142537234
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142536364..142538824-chr2:142574055..142576511,2	K562	blood:
2	chr2:142532703..142535665-chr2:142536672..142538561,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1008830	0.80[JPT][hapmap]
rs10182153	0.83[JPT][hapmap]
rs10193397	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs10195141	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs10496897	0.90[CHB][hapmap];0.88[CHD][hapmap]
rs10928123	0.90[CHB][hapmap]
rs12474491	0.90[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs12474567	0.90[CHB][hapmap];0.91[CHD][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs12612082	0.90[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap]
rs12616665	0.90[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap]
rs12691623	0.84[JPT][hapmap]
rs12990449	0.89[CHB][hapmap]
rs12992880	0.85[JPT][hapmap]
rs13004344	0.81[JPT][hapmap]
rs13018903	0.81[JPT][hapmap]
rs13019219	0.81[JPT][hapmap]
rs13412865	0.90[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap]
rs1369537	0.85[JPT][hapmap]
rs16847091	0.90[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs16847244	0.85[CHB][hapmap]
rs16847247	0.89[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap]
rs1866025	0.82[ASN][1000 genomes]
rs1866026	0.89[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs1866027	0.85[CHB][hapmap]
rs1992000	0.84[JPT][hapmap]
rs2009269	0.82[ASN][1000 genomes]
rs2009270	0.82[ASN][1000 genomes]
rs2048206	0.84[JPT][hapmap]
rs2217965	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs2890600	0.85[CHB][hapmap]
rs34527764	0.90[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap]
rs3856362	0.88[CHB][hapmap]
rs4622655	0.90[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap]
rs4954923	0.90[CHB][hapmap];0.91[CHD][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs6759610	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs7425972	0.90[CHB][hapmap];0.91[CHD][hapmap];0.80[JPT][hapmap]
rs7594617	0.81[MEX][hapmap]
rs7598314	0.81[TSI][hapmap]
rs972485	0.90[CHB][hapmap];0.88[CHD][hapmap]
rs974973	0.90[CHB][hapmap];0.88[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv459663	chr2:142509570-142568465	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv583236	chr2:142509570-142568465	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1004379	chr2:142514657-142547597	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv875246	chr2:142527100-142568465	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv875247	chr2:142527100-142569099	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv875248	chr2:142527100-142572590	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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