Variant report

Variant	rs13019219
Chromosome Location	chr2:142622739-142622740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10168519	0.84[CHB][hapmap]
rs10182153	0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs10204177	0.81[CHB][hapmap]
rs12620682	0.82[AFR][1000 genomes]
rs12623036	0.86[CEU][hapmap]
rs12691623	0.89[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs12691624	0.83[CHB][hapmap]
rs12992880	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs12993061	0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs13004344	0.94[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs13007371	0.84[CHB][hapmap]
rs13009181	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13016459	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.90[LWK][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap]
rs13018903	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13024611	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs13031421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13031743	0.94[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap]
rs13385804	0.84[MEX][hapmap]
rs1369537	0.89[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs1435595	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs16847056	1.00[YRI][hapmap]
rs16847378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1992000	0.89[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs2217964	0.81[JPT][hapmap]
rs352973	0.88[CEU][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]
rs352976	0.95[JPT][hapmap]
rs352986	0.94[CEU][hapmap];0.91[JPT][hapmap]
rs352994	0.82[CEU][hapmap];0.94[MEX][hapmap]
rs4662269	0.83[CHB][hapmap]
rs4662270	0.84[CHB][hapmap]
rs4662271	0.94[CEU][hapmap];0.94[CHB][hapmap]
rs4662467	0.83[CHB][hapmap]
rs4662468	0.93[CEU][hapmap];0.94[CHB][hapmap]
rs554965	0.94[CEU][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links