Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10168519	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10182153	0.94[CEU][hapmap];0.93[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1160815	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12691623	0.95[CEU][hapmap];0.93[CHB][hapmap];0.88[EUR][1000 genomes]
rs12691624	0.95[CEU][hapmap];0.81[CHB][hapmap]
rs12992880	0.95[CEU][hapmap];0.88[CHB][hapmap]
rs12993061	0.81[CHB][hapmap]
rs13007371	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs13016459	0.87[CHB][hapmap]
rs13018903	0.81[CHB][hapmap]
rs13019219	0.81[CHB][hapmap]
rs13024611	0.82[CHB][hapmap]
rs13031421	0.86[CHB][hapmap]
rs13031743	0.87[CHB][hapmap]
rs13400934	1.00[YRI][hapmap]
rs1369537	0.91[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1435593	0.95[CEU][hapmap]
rs16847378	0.86[CHB][hapmap]
rs1992000	0.90[CEU][hapmap];0.93[CHB][hapmap];0.85[EUR][1000 genomes]
rs352976	0.86[CEU][hapmap]
rs352978	0.85[CEU][hapmap]
rs352982	0.86[CEU][hapmap]
rs4662269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs4662270	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap]
rs4662271	0.88[CHB][hapmap]
rs4662467	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4662468	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

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