Variant report

Variant	rs12691624
Chromosome Location	chr2:142623835-142623836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10168519	0.96[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10182153	0.95[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10204177	0.95[CEU][hapmap];0.81[CHB][hapmap]
rs1160815	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12691623	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12992880	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs12993061	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs13007371	0.82[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap]
rs13018903	0.83[CHB][hapmap]
rs13019219	0.83[CHB][hapmap]
rs13024611	0.83[CHB][hapmap]
rs13031421	0.88[CHB][hapmap]
rs1369537	0.96[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1435593	0.88[CEU][hapmap];0.80[TSI][hapmap]
rs16847378	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs1992000	0.95[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs352976	0.92[CEU][hapmap]
rs352978	0.92[CEU][hapmap];0.83[JPT][hapmap]
rs352982	0.92[CEU][hapmap]
rs4662269	0.94[CEU][hapmap];0.89[CHB][hapmap]
rs4662270	0.96[CEU][hapmap];0.89[CHB][hapmap]
rs4662467	0.95[CEU][hapmap];0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12691624	ARHGAP15	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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