Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:37319878..37320632-chr2:142591665..142592650,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10168519	0.88[CEU][hapmap]
rs10182153	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs10204177	0.86[CEU][hapmap]
rs11899153	1.00[JPT][hapmap]
rs12620682	0.85[ASN][1000 genomes]
rs12691623	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs12691624	0.92[CEU][hapmap]
rs12992880	0.92[CEU][hapmap]
rs12993061	0.91[JPT][hapmap]
rs13007371	0.87[CEU][hapmap]
rs13031743	0.87[JPT][hapmap]
rs1369537	0.96[CEU][hapmap]
rs1992000	0.95[CEU][hapmap]
rs352973	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs352974	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs352975	0.85[ASN][1000 genomes]
rs352976	0.92[CEU][hapmap];0.95[CHB][hapmap]
rs352978	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs352994	0.95[JPT][hapmap]
rs4662269	0.85[CEU][hapmap];0.80[CHB][hapmap]
rs4662270	0.88[CEU][hapmap]
rs4662467	0.88[CEU][hapmap]
rs554965	0.91[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1010008	chr2:142574406-142606021	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

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