Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11899153	0.83[CEU][hapmap];0.84[JPT][hapmap]
rs12620682	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12623036	0.81[CEU][hapmap]
rs12993061	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs13004344	0.87[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs13009181	0.81[ASN][1000 genomes]
rs13016459	0.81[CEU][hapmap]
rs13018903	0.87[CEU][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs13019219	0.94[CEU][hapmap];0.91[JPT][hapmap]
rs13024611	0.88[CEU][hapmap]
rs13031421	0.93[CEU][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs13031743	0.87[CEU][hapmap]
rs1435595	0.94[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs16847378	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs352973	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs352974	0.91[ASN][1000 genomes]
rs352975	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs352976	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs352978	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs352982	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs352986	0.88[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs352994	0.87[CEU][hapmap]
rs4662271	0.88[CEU][hapmap]
rs4662468	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1010008	chr2:142574406-142606021	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

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