Variant report

Variant	rs1435595
Chromosome Location	chr2:142607001-142607002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12620682	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12623036	0.86[CEU][hapmap]
rs12691623	0.81[JPT][hapmap]
rs12992880	0.80[JPT][hapmap]
rs12993061	0.93[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap]
rs13004344	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs13009181	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13016459	0.86[CEU][hapmap]
rs13018903	0.93[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13019219	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs13024611	0.94[CEU][hapmap]
rs13031421	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13031743	0.93[CEU][hapmap]
rs1369537	0.80[JPT][hapmap]
rs16847056	1.00[YRI][hapmap]
rs16847378	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1992000	0.80[JPT][hapmap]
rs352973	0.86[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs352974	0.82[ASN][1000 genomes]
rs352975	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs352976	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs352978	0.85[CHB][hapmap]
rs352986	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs352994	0.80[CEU][hapmap]
rs4662271	0.94[CEU][hapmap]
rs4662468	0.93[CEU][hapmap]
rs554965	0.94[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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