Variant report

Variant	rs352973
Chromosome Location	chr2:142582263-142582264
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142579723..142582513-chr2:142586057..142589014,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11899153	0.88[CEU][hapmap];0.86[YRI][hapmap]
rs12616665	0.82[MEX][hapmap]
rs12620682	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12623036	0.80[CEU][hapmap]
rs12691623	0.81[JPT][hapmap]
rs12992880	0.83[JPT][hapmap]
rs12993061	0.80[CEU][hapmap]
rs13004344	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs13009181	0.82[ASN][1000 genomes]
rs13016459	0.82[MEX][hapmap]
rs13018903	0.82[CEU][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs13019219	0.88[CEU][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]
rs13024611	0.81[CEU][hapmap]
rs13031421	0.84[CEU][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs13031743	0.81[CEU][hapmap];0.88[MEX][hapmap]
rs1369537	0.83[JPT][hapmap]
rs1435595	0.86[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs16847378	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1992000	0.80[JPT][hapmap]
rs352974	0.88[ASN][1000 genomes]
rs352975	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs352976	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs352978	0.85[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap]
rs352982	0.85[CHB][hapmap]
rs352986	0.81[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs352994	0.89[ASW][hapmap];0.94[CEU][hapmap];0.90[CHD][hapmap];0.80[LWK][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap]
rs4662271	0.81[CEU][hapmap]
rs4662468	0.80[CEU][hapmap]
rs554965	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1010008	chr2:142574406-142606021	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142579000-142582400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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