Variant report

Variant	rs13004344
Chromosome Location	chr2:142606736-142606737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10182153	0.84[JPT][hapmap]
rs12620682	0.91[ASN][1000 genomes]
rs12623036	0.80[CEU][hapmap]
rs12691623	0.85[JPT][hapmap]
rs12992880	0.87[JPT][hapmap]
rs12993061	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs13009181	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13016459	0.94[CEU][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs13018903	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13019219	0.94[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs13024611	0.88[CEU][hapmap]
rs13031421	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13031743	0.88[CEU][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap]
rs1369537	0.87[JPT][hapmap]
rs1435595	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs16847378	0.92[CEU][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1992000	0.85[JPT][hapmap]
rs2217964	0.81[JPT][hapmap]
rs352973	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs352974	0.82[ASN][1000 genomes]
rs352975	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs352976	0.95[JPT][hapmap]
rs352978	0.85[CHB][hapmap]
rs352986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs352994	0.90[CHD][hapmap];0.89[MEX][hapmap]
rs4662271	0.88[CEU][hapmap]
rs4662468	0.87[CEU][hapmap]
rs554965	0.87[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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