Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10182153	0.81[JPT][hapmap]
rs11899153	0.87[YRI][hapmap]
rs12620682	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12623036	0.88[CEU][hapmap]
rs12993061	1.00[CEU][hapmap]
rs13004344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs13009181	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13016459	1.00[CEU][hapmap]
rs13018903	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13019219	0.94[CEU][hapmap];0.91[JPT][hapmap]
rs13024611	0.94[CEU][hapmap]
rs13031421	1.00[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13031743	0.94[CEU][hapmap]
rs1435595	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs16847378	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs352973	0.81[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs352974	0.83[ASN][1000 genomes]
rs352975	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs352976	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs352978	0.85[CHB][hapmap]
rs4662271	0.94[CEU][hapmap]
rs4662468	0.94[CEU][hapmap]
rs554965	0.88[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1010008	chr2:142574406-142606021	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: