Variant report
Variant | rs13024611 |
---|---|
Chromosome Location | chr2:142632108-142632109 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10168519 | 0.84[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes] |
rs10204177 | 0.82[CHB][hapmap] |
rs1160815 | 0.85[ASN][1000 genomes] |
rs12623036 | 0.94[CEU][hapmap] |
rs12691624 | 0.83[CHB][hapmap] |
rs12993061 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap] |
rs13004344 | 0.88[CEU][hapmap] |
rs13007371 | 0.84[CHB][hapmap] |
rs13009181 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs13016459 | 0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap] |
rs13018903 | 0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[EUR][1000 genomes] |
rs13019219 | 0.94[CEU][hapmap];0.88[CHB][hapmap] |
rs13031421 | 0.93[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs13031743 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap] |
rs1435595 | 0.94[CEU][hapmap] |
rs16847378 | 0.93[CEU][hapmap];0.88[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs352973 | 0.81[CEU][hapmap] |
rs352986 | 0.94[CEU][hapmap] |
rs4662269 | 0.84[CHB][hapmap] |
rs4662270 | 0.84[CHB][hapmap] |
rs4662271 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap] |
rs4662467 | 0.84[CHB][hapmap] |
rs4662468 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap] |
rs554965 | 0.88[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv1009893 | chr2:142585905-142662116 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
3 | nsv459674 | chr2:142592560-142636907 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
4 | nsv583237 | chr2:142592560-142636907 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |