Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10167034	0.81[YRI][hapmap]
rs10182153	0.91[CEU][hapmap];0.94[CHB][hapmap];0.88[EUR][1000 genomes]
rs10204177	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs10439187	0.81[YRI][hapmap]
rs1160815	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12691623	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12691624	0.96[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs12992880	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs12993061	0.84[CHB][hapmap]
rs13007371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13016459	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs13018903	0.84[CHB][hapmap]
rs13019219	0.84[CHB][hapmap]
rs13024611	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs13031421	0.83[CHB][hapmap]
rs13031743	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs1369537	0.92[CEU][hapmap];0.95[CHB][hapmap];0.83[EUR][1000 genomes]
rs1435593	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs16847378	0.83[CHB][hapmap]
rs1992000	0.91[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs352976	0.88[CEU][hapmap]
rs352978	0.87[CEU][hapmap]
rs352982	0.88[CEU][hapmap]
rs4662269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4662270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs4662271	0.90[CHB][hapmap]
rs4662467	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4662468	0.90[CHB][hapmap]
rs9287325	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142630000-142631800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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