Variant report

Variant	rs1435593
Chromosome Location	chr2:142635982-142635983
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10168519	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs10182153	0.85[CEU][hapmap]
rs10204177	0.95[CEU][hapmap]
rs12691623	0.91[CEU][hapmap]
rs12691624	0.88[CEU][hapmap];0.80[TSI][hapmap]
rs12992880	0.88[CEU][hapmap]
rs13007371	0.91[CEU][hapmap];0.80[CHD][hapmap];0.86[TSI][hapmap]
rs1369537	0.84[CEU][hapmap]
rs1992000	0.85[CEU][hapmap]
rs4662269	0.89[CEU][hapmap]
rs4662270	0.91[CEU][hapmap]
rs4662467	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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