Variant report
| Variant | rs352978 |
|---|---|
| Chromosome Location | chr2:142585905-142585906 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10168519 | 0.87[CEU][hapmap] |
| rs10182153 | 0.85[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs10204177 | 0.85[CEU][hapmap] |
| rs11899153 | 0.95[JPT][hapmap] |
| rs12620682 | 0.85[ASN][1000 genomes] |
| rs12691623 | 0.91[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs12691624 | 0.92[CEU][hapmap];0.83[JPT][hapmap] |
| rs12992880 | 0.92[CEU][hapmap] |
| rs12993061 | 0.95[JPT][hapmap] |
| rs13004344 | 0.85[CHB][hapmap] |
| rs13007371 | 0.87[CEU][hapmap] |
| rs13031743 | 0.83[JPT][hapmap] |
| rs1369537 | 0.96[CEU][hapmap] |
| rs1435595 | 0.85[CHB][hapmap] |
| rs1992000 | 0.95[CEU][hapmap] |
| rs352973 | 0.85[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs352974 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs352975 | 0.85[ASN][1000 genomes] |
| rs352976 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap] |
| rs352982 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap] |
| rs352986 | 0.85[CHB][hapmap] |
| rs352991 | 0.86[CHB][hapmap] |
| rs352994 | 0.91[JPT][hapmap] |
| rs4662269 | 0.83[CEU][hapmap] |
| rs4662270 | 0.87[CEU][hapmap] |
| rs4662467 | 0.86[CEU][hapmap] |
| rs554965 | 0.80[CHB][hapmap];0.87[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834394 | chr2:142430225-142593264 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv875249 | chr2:142527100-142614345 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 4 | nsv875250 | chr2:142540240-142614345 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv1010008 | chr2:142574406-142606021 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 6 | nsv1009893 | chr2:142585905-142662116 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
