Variant report
| Variant | rs1437345 |
|---|---|
| Chromosome Location | chr2:142574608-142574609 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1009398 | 0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs10183908 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs10460250 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs10496896 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs10496898 | 0.96[CHB][hapmap];0.81[JPT][hapmap] |
| rs11679158 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs13416257 | 0.91[CHB][hapmap] |
| rs1595318 | 0.96[CHB][hapmap];0.95[JPT][hapmap] |
| rs16847120 | 0.91[CHB][hapmap] |
| rs1876595 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1898425 | 0.94[ASN][1000 genomes] |
| rs1975286 | 0.89[CHB][hapmap];0.89[JPT][hapmap] |
| rs2009263 | 0.92[ASN][1000 genomes] |
| rs2196597 | 0.96[CHB][hapmap];0.95[JPT][hapmap] |
| rs2381153 | 0.95[CHB][hapmap];0.82[JPT][hapmap] |
| rs28529494 | 0.83[ASN][1000 genomes] |
| rs4996425 | 0.81[ASN][1000 genomes] |
| rs6720157 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs752451 | 0.92[ASN][1000 genomes] |
| rs7558916 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs7591783 | 0.95[CHB][hapmap];0.81[JPT][hapmap] |
| rs7594617 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs7598314 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs974974 | 0.91[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834394 | chr2:142430225-142593264 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv875249 | chr2:142527100-142614345 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 4 | nsv875250 | chr2:142540240-142614345 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv1010008 | chr2:142574406-142606021 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
