Variant report

Variant	rs1037250
Chromosome Location	chr14:85059183-85059184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1037251	0.89[ASN][1000 genomes]
rs11847513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120171	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120173	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120175	0.81[EUR][1000 genomes]
rs17120180	0.81[EUR][1000 genomes]
rs2922651	0.89[ASN][1000 genomes]
rs3008504	0.89[ASN][1000 genomes]
rs3008505	0.89[ASN][1000 genomes]
rs57651825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59134374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150499	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73372005	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73377471	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73381138	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73387324	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73387326	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73389279	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74071320	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs986734	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046875	chr14:84993510-85193250	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1052415	chr14:85001891-85078853	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv456354	chr14:85046837-85110699	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv565377	chr14:85046837-85110699	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv902162	chr14:85048957-85131164	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85058600-85059200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:85058600-85060200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:85058800-85059200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:85058800-85060000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:85058800-85067200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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