Variant report

Variant	rs17120173
Chromosome Location	chr14:85081053-85081054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1037250	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1037251	0.89[ASN][1000 genomes]
rs11847513	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120161	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2922651	0.89[ASN][1000 genomes]
rs3008504	0.89[ASN][1000 genomes]
rs3008505	0.89[ASN][1000 genomes]
rs57651825	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59134374	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150499	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73372005	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73377471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73381138	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73387324	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73387326	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73389279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74071320	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs986734	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046875	chr14:84993510-85193250	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv456354	chr14:85046837-85110699	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv565377	chr14:85046837-85110699	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv902162	chr14:85048957-85131164	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv565378	chr14:85070611-85140984	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85080800-85082800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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