Variant report

Variant	rs73389279
Chromosome Location	chr14:85074290-85074291
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1037250	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1037251	0.89[ASN][1000 genomes]
rs11847513	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120161	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120173	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2922651	0.89[ASN][1000 genomes]
rs3008504	0.89[ASN][1000 genomes]
rs3008505	0.89[ASN][1000 genomes]
rs57651825	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59134374	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150499	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73372005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73377471	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73381138	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73387324	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73387326	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74071320	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs986734	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046875	chr14:84993510-85193250	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1052415	chr14:85001891-85078853	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv456354	chr14:85046837-85110699	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv565377	chr14:85046837-85110699	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv902162	chr14:85048957-85131164	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv565378	chr14:85070611-85140984	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85073000-85074400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr14:85073000-85074800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr14:85073400-85078200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links