Variant report

Variant	rs1037763
Chromosome Location	chr4:119966718-119966719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:119961660..119966741-chr4:120131496..120138495,10	MCF-7	breast:
2	chr4:119964664..119967824-chr4:120028894..120031199,3	MCF-7	breast:
3	chr4:119964653..119967509-chr4:119968374..119970104,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145390	Chromatin interaction
ENSG00000178636	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1037762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098474	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12506805	0.95[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12506823	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12506878	0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12509365	0.83[ASW][hapmap];0.81[CHB][hapmap]
rs12641581	0.81[CHB][hapmap]
rs13137064	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085660	0.81[CHB][hapmap]
rs2100709	0.81[CHB][hapmap]
rs4438744	0.81[CHB][hapmap]
rs4833604	0.94[ASN][1000 genomes]
rs4834737	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71610236	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs766350	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119956200-119967400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:119956200-119973200	Weak transcription	Psoas Muscle	Psoas
3	chr4:119958800-119970400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:119962200-119967600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:119962200-119967600	Weak transcription	Esophagus	oesophagus
6	chr4:119962200-119967600	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:119962200-119973200	Weak transcription	Left Ventricle	heart
8	chr4:119962200-119973200	Weak transcription	Right Atrium	heart
9	chr4:119962600-119967600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:119963200-119967600	Weak transcription	Brain Angular Gyrus	brain
11	chr4:119963200-119969600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:119963200-119970200	Weak transcription	Fetal Kidney	kidney
13	chr4:119963200-119973400	Weak transcription	Aorta	Aorta
14	chr4:119963600-119967200	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:119963800-119967200	Weak transcription	HSMM	muscle
16	chr4:119963800-119967400	Weak transcription	Osteobl	bone
17	chr4:119964000-119967000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:119964000-119967000	Weak transcription	Fetal Heart	heart
19	chr4:119964000-119967000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:119964000-119967200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:119964000-119967400	Weak transcription	Brain Anterior Caudate	brain
22	chr4:119964000-119980400	Weak transcription	Fetal Stomach	stomach
23	chr4:119964200-119967200	Weak transcription	NHLF	lung
24	chr4:119964200-119967400	Weak transcription	HUVEC	blood vessel
25	chr4:119964200-119969800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:119964400-119968000	Enhancers	A549	lung
27	chr4:119965000-119967600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:119965400-119968000	Enhancers	Fetal Lung	lung
29	chr4:119965400-119969800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:119965600-119967600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:119965800-119966800	Enhancers	HSMMtube	muscle
32	chr4:119965800-119971000	Enhancers	Colon Smooth Muscle	Colon
33	chr4:119966000-119968800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr4:119966200-119967400	Weak transcription	NHDF-Ad	bronchial
35	chr4:119966200-119973000	Weak transcription	Right Ventricle	heart
36	chr4:119966400-119966800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:119966400-119971400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:119966600-119967000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:119966600-119967000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr4:119966600-119967200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:119966600-119967200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:119966600-119967200	Weak transcription	Ovary	ovary

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