Variant report

Variant	rs13137064
Chromosome Location	chr4:119971043-119971044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119961771..119963428-chr4:119969203..119971294,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1037762	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1037763	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098474	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12506805	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12506823	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12506878	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12509365	0.82[CHB][hapmap]
rs12641581	0.82[CHB][hapmap]
rs2085660	0.81[CHB][hapmap]
rs2100709	0.82[CHB][hapmap]
rs4438744	0.81[CHB][hapmap]
rs4833604	0.94[ASN][1000 genomes]
rs4834737	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71610236	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs766350	0.82[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119956200-119973200	Weak transcription	Psoas Muscle	Psoas
2	chr4:119962200-119973200	Weak transcription	Left Ventricle	heart
3	chr4:119962200-119973200	Weak transcription	Right Atrium	heart
4	chr4:119963200-119973400	Weak transcription	Aorta	Aorta
5	chr4:119964000-119980400	Weak transcription	Fetal Stomach	stomach
6	chr4:119966200-119973000	Weak transcription	Right Ventricle	heart
7	chr4:119966400-119971400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:119967400-119994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:119967800-119973800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:119967800-119975200	Weak transcription	Pancreas	Pancrea
11	chr4:119967800-119977400	Weak transcription	Gastric	stomach
12	chr4:119968000-119971400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:119968600-119971400	Weak transcription	HSMM	muscle
14	chr4:119968800-119973200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:119968800-119974000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:119969200-119973200	Weak transcription	Fetal Heart	heart
17	chr4:119969600-119972200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:119970200-119971400	Enhancers	Fetal Lung	lung
19	chr4:119970200-119972000	Enhancers	A549	lung
20	chr4:119970400-119978600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:119970400-119981400	Weak transcription	Ovary	ovary
22	chr4:119970600-119972200	Enhancers	Osteobl	bone
23	chr4:119970800-119971200	Weak transcription	HSMMtube	muscle
24	chr4:119970800-119973000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:119971000-119989600	Weak transcription	Colon Smooth Muscle	Colon

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