Variant report

Variant	rs4833604
Chromosome Location	chr4:119971792-119971793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1037762	0.94[ASN][1000 genomes]
rs1037763	0.94[ASN][1000 genomes]
rs11098474	0.83[ASN][1000 genomes]
rs12506805	0.84[ASN][1000 genomes]
rs12506823	0.84[ASN][1000 genomes]
rs12506878	0.84[ASN][1000 genomes]
rs13137064	0.94[ASN][1000 genomes]
rs4834737	0.87[ASN][1000 genomes]
rs71610236	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119956200-119973200	Weak transcription	Psoas Muscle	Psoas
2	chr4:119962200-119973200	Weak transcription	Left Ventricle	heart
3	chr4:119962200-119973200	Weak transcription	Right Atrium	heart
4	chr4:119963200-119973400	Weak transcription	Aorta	Aorta
5	chr4:119964000-119980400	Weak transcription	Fetal Stomach	stomach
6	chr4:119966200-119973000	Weak transcription	Right Ventricle	heart
7	chr4:119967400-119994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:119967800-119973800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:119967800-119975200	Weak transcription	Pancreas	Pancrea
10	chr4:119967800-119977400	Weak transcription	Gastric	stomach
11	chr4:119968800-119973200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:119968800-119974000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:119969200-119973200	Weak transcription	Fetal Heart	heart
14	chr4:119969600-119972200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:119970200-119972000	Enhancers	A549	lung
16	chr4:119970400-119978600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:119970400-119981400	Weak transcription	Ovary	ovary
18	chr4:119970600-119972200	Enhancers	Osteobl	bone
19	chr4:119970800-119973000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:119971000-119989600	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:119971200-119972200	Enhancers	HSMMtube	muscle
22	chr4:119971400-119972000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr4:119971400-119972000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:119971600-119972000	Enhancers	NH-A	brain

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