Variant report

Variant	rs10399785
Chromosome Location	chr1:94877801-94877802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10399820	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11165135	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1765652	0.96[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4477285	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681849	0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94861600-94882800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:94874000-94882800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:94874000-94882800	Weak transcription	Fetal Brain Male	brain
4	chr1:94874600-94882600	Weak transcription	Fetal Kidney	kidney
5	chr1:94874600-94882800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:94876000-94879000	Weak transcription	Primary T cells from cord blood	blood
7	chr1:94876000-94883000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:94876400-94878800	Weak transcription	Fetal Thymus	thymus
9	chr1:94876600-94878800	Weak transcription	Thymus	Thymus
10	chr1:94877200-94878200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:94877400-94882200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:94877600-94882400	Weak transcription	NHEK	skin
13	chr1:94877600-94882600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr1:94877800-94878800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr1:94877800-94878800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr1:94877800-94879800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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