Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr1:94876772-94877196	GM12878	blood:	n/a	n/a
2	MAX	chr1:94876832-94876987	GM12878	blood:	n/a	n/a
3	SPI1	chr1:94876855-94877042	GM12878	blood:	n/a	n/a
4	EP300	chr1:94876839-94877091	GM12878	blood:	n/a	n/a
5	NFIC	chr1:94876750-94877171	GM12878	blood:	n/a	n/a
6	SPI1	chr1:94876808-94877118	GM12878	blood:	n/a	n/a
7	BCL11A	chr1:94876815-94877104	GM12878	blood:	n/a	n/a
8	BHLHE40	chr1:94876747-94877119	GM12878	blood:	n/a	n/a
9	CUX1	chr1:94876576-94877005	GM12878	blood:	n/a	n/a
10	SPI1	chr1:94876790-94877186	GM12891	blood:	n/a	n/a
11	IKZF1	chr1:94876919-94877166	GM12878	blood:	n/a	n/a
12	BATF	chr1:94876808-94877148	GM12878	blood:	n/a	n/a
13	RUNX3	chr1:94876695-94877156	GM12878	blood:	n/a	n/a
14	SPI1	chr1:94876790-94877182	GM12891	blood:	n/a	n/a
15	MXI1	chr1:94876808-94877001	GM12878	blood:	n/a	n/a
16	EP300	chr1:94876838-94877130	GM12878	blood:	n/a	n/a
17	BCL11A	chr1:94876806-94877085	GM12878	blood:	n/a	n/a
18	IRF4	chr1:94876819-94877114	GM12878	blood:	n/a	n/a
19	BCLAF1	chr1:94876832-94877125	GM12878	blood:	n/a	n/a
20	JUND	chr1:94876667-94877272	GM12878	blood:	n/a	n/a
21	SPI1	chr1:94876754-94877186	HL-60	blood:	n/a	n/a
22	BATF	chr1:94876823-94877077	GM12878	blood:	n/a	n/a
23	FOS	chr1:94876854-94877073	HUVEC	blood vessel:	n/a	n/a
24	RCOR1	chr1:94876841-94877023	GM12878	blood:	n/a	n/a
25	IRF4	chr1:94876746-94877126	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000232918	TF binding region

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10399785	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10399820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11165135	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1765652	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6681849	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94861600-94882800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:94874000-94882800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:94874000-94882800	Weak transcription	Fetal Brain Male	brain
4	chr1:94874600-94882600	Weak transcription	Fetal Kidney	kidney
5	chr1:94874600-94882800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:94875600-94877200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:94876000-94877800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:94876000-94879000	Weak transcription	Primary T cells from cord blood	blood
9	chr1:94876000-94883000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:94876200-94877200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:94876400-94878800	Weak transcription	Fetal Thymus	thymus
12	chr1:94876600-94877200	Enhancers	GM12878-XiMat	blood
13	chr1:94876600-94877400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:94876600-94878800	Weak transcription	Thymus	Thymus
15	chr1:94876800-94877200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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