Variant report

Variant	rs1765652
Chromosome Location	chr1:94866463-94866464
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10399785	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10399820	0.89[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10443195	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165135	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4477285	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6681849	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs6698203	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94861600-94876000	Weak transcription	Thymus	Thymus
2	chr1:94861600-94882800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:94861800-94873600	Weak transcription	A549	lung
4	chr1:94865600-94866600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:94865800-94866600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:94865800-94867000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:94866000-94867200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:94866000-94867800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:94866200-94867000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:94866200-94867600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:94866200-94867600	Enhancers	HMEC	breast
12	chr1:94866400-94867000	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links