Variant report

Variant	rs10401119
Chromosome Location	chr18:28793729-28793730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10401102	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10401103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12970781	1.00[AMR][1000 genomes]
rs16961524	1.00[AMR][1000 genomes]
rs16961527	1.00[AMR][1000 genomes]
rs72924514	1.00[AMR][1000 genomes]
rs73952880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952883	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952884	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952885	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952886	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952887	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952888	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952889	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952890	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952892	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8085356	1.00[AMR][1000 genomes]
rs8097237	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8097407	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9947224	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9960135	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9962447	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9962717	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28787200-28805600	Weak transcription	Pancreas	Pancrea
2	chr18:28787600-28794600	Enhancers	Fetal Intestine Large	intestine
3	chr18:28787600-28797000	Weak transcription	Right Atrium	heart
4	chr18:28788000-28796600	Weak transcription	Placenta	Placenta
5	chr18:28790600-28794600	Enhancers	Fetal Intestine Small	intestine
6	chr18:28791000-28793800	Enhancers	Duodenum Mucosa	Duodenum
7	chr18:28791400-28796800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr18:28791400-28796800	Weak transcription	Left Ventricle	heart
9	chr18:28791400-28805600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr18:28792000-28796600	Weak transcription	Stomach Mucosa	stomach
11	chr18:28792400-28796800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr18:28792600-28793800	Enhancers	HepG2	liver
13	chr18:28793400-28793800	Enhancers	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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