Variant report

Variant	rs16961524
Chromosome Location	chr18:28826178-28826179
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10401102	1.00[AMR][1000 genomes]
rs10401103	1.00[AMR][1000 genomes]
rs10401119	1.00[AMR][1000 genomes]
rs16961527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72924514	1.00[AMR][1000 genomes]
rs73952880	1.00[AMR][1000 genomes]
rs73952883	1.00[AMR][1000 genomes]
rs73952884	1.00[AMR][1000 genomes]
rs73952885	1.00[AMR][1000 genomes]
rs73952886	1.00[AMR][1000 genomes]
rs73952887	1.00[AMR][1000 genomes]
rs73952888	1.00[AMR][1000 genomes]
rs73952889	1.00[AMR][1000 genomes]
rs73952890	1.00[AMR][1000 genomes]
rs73952891	1.00[AMR][1000 genomes]
rs73952892	1.00[AMR][1000 genomes]
rs8085356	1.00[AMR][1000 genomes]
rs8097237	1.00[AMR][1000 genomes]
rs8097407	1.00[AMR][1000 genomes]
rs9947224	1.00[AMR][1000 genomes]
rs9960135	1.00[AMR][1000 genomes]
rs9962447	1.00[AMR][1000 genomes]
rs9962717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28820600-28828000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr18:28820800-28826200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr18:28822200-28826800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:28824000-28826200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:28824200-28826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:28824200-28827000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:28824200-28827600	Weak transcription	Pancreas	Pancrea
8	chr18:28824800-28830200	Weak transcription	Left Ventricle	heart
9	chr18:28825000-28826800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr18:28825200-28826200	Enhancers	Fetal Intestine Small	intestine
11	chr18:28825200-28826200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr18:28825200-28826200	Enhancers	HMEC	breast
13	chr18:28825200-28826200	Enhancers	NHEK	skin
14	chr18:28825200-28826600	Enhancers	Fetal Intestine Large	intestine
15	chr18:28825200-28826600	Enhancers	Fetal Kidney	kidney
16	chr18:28825200-28835400	Weak transcription	Right Atrium	heart
17	chr18:28825400-28826200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr18:28825400-28826600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr18:28825400-28826600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr18:28825400-28827400	Weak transcription	Liver	Liver
21	chr18:28825400-28828000	Enhancers	GM12878-XiMat	blood
22	chr18:28825800-28826600	Enhancers	HepG2	liver
23	chr18:28825800-28827600	Weak transcription	A549	lung
24	chr18:28826000-28826800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr18:28826000-28826800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr18:28826000-28826800	Weak transcription	Hela-S3	cervix
27	chr18:28826000-28827600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr18:28826000-28827600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr18:28826000-28829000	Weak transcription	NH-A	brain
30	chr18:28826000-28831000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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