Variant report

Variant	rs9947224
Chromosome Location	chr18:28790482-28790483
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28789661..28791901-chr18:28794620..28797352,2	MCF-7	breast:
2	chr18:28790072..28792020-chr18:28794331..28796808,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10401102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10401103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10401119	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12970781	1.00[AMR][1000 genomes]
rs16961524	1.00[AMR][1000 genomes]
rs16961527	1.00[AMR][1000 genomes]
rs72924514	1.00[AMR][1000 genomes]
rs73952880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952884	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952885	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952889	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73952892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8085356	1.00[AMR][1000 genomes]
rs8097237	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8097407	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9960135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9962447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9962717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28783400-28791200	Weak transcription	Right Ventricle	heart
2	chr18:28785200-28790800	Weak transcription	Fetal Heart	heart
3	chr18:28787000-28791000	Weak transcription	Esophagus	oesophagus
4	chr18:28787000-28791000	Weak transcription	Left Ventricle	heart
5	chr18:28787200-28805600	Weak transcription	Pancreas	Pancrea
6	chr18:28787600-28791000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr18:28787600-28794600	Enhancers	Fetal Intestine Large	intestine
8	chr18:28787600-28797000	Weak transcription	Right Atrium	heart
9	chr18:28787800-28792600	Weak transcription	HepG2	liver
10	chr18:28788000-28791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr18:28788000-28796600	Weak transcription	Placenta	Placenta
12	chr18:28788200-28790800	Weak transcription	Stomach Mucosa	stomach
13	chr18:28788200-28791000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr18:28788200-28791200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:28788400-28791000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr18:28788400-28791000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr18:28788400-28792200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr18:28789400-28790600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr18:28789600-28790600	Weak transcription	Fetal Intestine Small	intestine
20	chr18:28789600-28791000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr18:28789600-28791000	Weak transcription	NHEK	skin
22	chr18:28789800-28790600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr18:28790400-28792400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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