Variant report

Variant	rs10401365
Chromosome Location	chr19:56903491-56903492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:56903000-56903594	K562	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:56878056..56881655-chr19:56903333..56906269,5	K562	blood:
2	chr19:56630391..56632820-chr19:56902199..56906311,3	K562	blood:
3	chr19:56896992..56902951-chr19:56903012..56907037,12	K562	blood:
4	chr19:56902006..56908060-chr19:56909612..56917978,15	K562	blood:
5	chr19:56878151..56881655-chr19:56903333..56906269,7	K562	blood:
6	chr19:56825335..56828118-chr19:56903219..56906332,4	K562	blood:
7	chr19:56630391..56632820-chr19:56902199..56904998,2	K562	blood:
8	chr19:56825335..56828118-chr19:56903219..56905060,3	K562	blood:
9	chr19:56902257..56906485-chr19:56913118..56917978,7	K562	blood:
10	chr19:56886550..56889123-chr19:56903257..56905976,3	K562	blood:

No data

Variant related genes	Relation type
ZNF582-AS1	TF binding region
ENSG00000200646	Chromatin interaction
ENSG00000240225	Chromatin interaction
ENSG00000142409	Chromatin interaction
ENSG00000267549	Chromatin interaction
ENSG00000267781	Chromatin interaction
ENSG00000267606	Chromatin interaction
ENSG00000131848	Chromatin interaction
ENSG00000267776	Chromatin interaction
ENSG00000267192	Chromatin interaction
ENSG00000198440	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10408970	1.00[AMR][1000 genomes]
rs10419992	1.00[AMR][1000 genomes]
rs59829089	1.00[AMR][1000 genomes]
rs73621260	1.00[AMR][1000 genomes]
rs73621264	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621272	1.00[AMR][1000 genomes]
rs8100609	1.00[AMR][1000 genomes]
rs8100715	1.00[AMR][1000 genomes]
rs8109989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8110143	1.00[AMR][1000 genomes]
rs8110200	1.00[AMR][1000 genomes]
rs8111813	1.00[AMR][1000 genomes]
rs8113261	0.83[AMR][1000 genomes]
rs8113288	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
2	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
5	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56881200-56904000	ZNF genes & repeats	Liver	Liver
2	chr19:56889200-56904400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:56889400-56904000	Weak transcription	Fetal Heart	heart
4	chr19:56889400-56904000	Weak transcription	K562	blood
5	chr19:56890200-56903600	Weak transcription	Fetal Brain Male	brain
6	chr19:56890600-56904000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr19:56894200-56903800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:56896000-56904400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr19:56896600-56904200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr19:56896800-56903800	Weak transcription	Fetal Kidney	kidney
11	chr19:56897400-56904200	Weak transcription	NHLF	lung
12	chr19:56898200-56904000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr19:56898200-56904000	Weak transcription	Osteobl	bone
14	chr19:56898200-56904200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr19:56899200-56904000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr19:56899400-56904200	Weak transcription	NH-A	brain
17	chr19:56900000-56903600	Strong transcription	Psoas Muscle	Psoas
18	chr19:56900000-56906800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr19:56900200-56903800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr19:56900200-56904000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
21	chr19:56900800-56903600	Strong transcription	Primary T cells from cord blood	blood
22	chr19:56900800-56904400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr19:56900800-56904400	Weak transcription	HSMMtube	muscle
24	chr19:56901400-56904000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr19:56901400-56904200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr19:56901600-56903600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr19:56901600-56904000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr19:56901600-56904600	Weak transcription	Small Intestine	intestine
29	chr19:56901800-56903600	Weak transcription	Brain Angular Gyrus	brain
30	chr19:56901800-56903600	Weak transcription	Brain Substantia Nigra	brain
31	chr19:56901800-56903800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr19:56901800-56903800	Weak transcription	Colon Smooth Muscle	Colon
33	chr19:56901800-56903800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr19:56901800-56904000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr19:56901800-56904200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr19:56901800-56904200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr19:56901800-56904200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr19:56901800-56904200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr19:56901800-56904200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr19:56901800-56904400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:56901800-56904600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr19:56902000-56903600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr19:56902000-56903600	Weak transcription	Fetal Lung	lung
44	chr19:56902000-56903600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr19:56902000-56903800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr19:56902000-56903800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr19:56902000-56904200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr19:56902000-56904200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr19:56902000-56904200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr19:56902000-56904200	Weak transcription	Aorta	Aorta

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