Variant report

Variant	rs73621260
Chromosome Location	chr19:56909324-56909325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:23)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF583-1	chr19:56909250-56909417	ENSG00000245902
2	lnc-ZNF583-1	chr19:56909250-56910541	ENSG00000245902
3	lnc-ZNF583-1	chr19:56909250-56909417	ENSG00000245902
4	lnc-ZNF583-1	chr19:56909250-56909357	XLOC_013167
5	lnc-ZNF583-1	chr19:56909250-56909752	XLOC_013167
6	lnc-ZNF583-1	chr19:56909250-56909417	XLOC_013167
7	lnc-ZNF583-1	chr19:56909250-56909417	XLOC_013167
8	lnc-ZNF583-1	chr19:56909250-56909357	XLOC_013167
9	lnc-ZNF583-1	chr19:56909250-56909357	XLOC_013167
10	lnc-ZNF583-1	chr19:56909250-56909357	XLOC_013167
11	lnc-ZNF583-1	chr19:56909250-56909417	XLOC_013167
12	lnc-ZNF583-1	chr19:56909250-56909417	XLOC_013167
13	lnc-ZNF583-1	chr19:56909250-56909521	ENSG00000267454.1
14	lnc-ZNF583-1	chr19:56909250-56909417	NONHSAT068133
15	lnc-ZNF583-1	chr19:56909250-56910544	NONHSAT068134
16	lnc-ZNF583-1	chr19:56909250-56909417	NONHSAT068139
17	lnc-ZNF583-1	chr19:56909128-56909417	NONHSAT068144
18	lnc-ZNF583-1	chr19:56909128-56909357	NONHSAT068145
19	lnc-ZNF583-1	chr19:56909250-56909752	NONHSAT068131
20	lnc-ZNF583-1	chr19:56909250-56909417	NONHSAT068135
21	lnc-ZNF583-1	chr19:56908633-56909752	NONHSAT147062
22	lnc-ZNF583-1	chr19:56909207-56909417	NONHSAT068146
23	lnc-ZNF583-1	chr19:56909250-56909417	NONHSAT068132

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10401365	1.00[AMR][1000 genomes]
rs10408970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10409767	0.95[AFR][1000 genomes]
rs10419992	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59829089	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621264	1.00[AMR][1000 genomes]
rs73621272	1.00[AMR][1000 genomes]
rs8100609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8100715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8109989	1.00[AMR][1000 genomes]
rs8110143	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8110200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8111813	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8113261	0.83[AMR][1000 genomes]
rs8113288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
2	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
5	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv544096	chr19:56905651-56933455	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56905000-56913600	ZNF genes & repeats	Liver	Liver
2	chr19:56905400-56909400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:56905400-56910800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:56905400-56911000	Weak transcription	Stomach Mucosa	stomach
5	chr19:56905600-56909400	Weak transcription	Brain Germinal Matrix	brain
6	chr19:56905600-56909400	Weak transcription	Brain Substantia Nigra	brain
7	chr19:56905600-56909400	Weak transcription	Fetal Brain Female	brain
8	chr19:56905600-56910000	Weak transcription	Fetal Brain Male	brain
9	chr19:56905600-56910200	Weak transcription	Fetal Kidney	kidney
10	chr19:56905600-56914600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr19:56905800-56910000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr19:56905800-56914400	Weak transcription	Fetal Heart	heart
13	chr19:56906000-56909400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr19:56906000-56909400	Weak transcription	Right Ventricle	heart
15	chr19:56906000-56910200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr19:56906000-56910200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr19:56906000-56910400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr19:56906200-56909400	Weak transcription	Brain Angular Gyrus	brain
19	chr19:56906200-56909400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr19:56907400-56910200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr19:56908000-56909600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr19:56908000-56910400	Strong transcription	Skeletal Muscle Male	skeletal muscle
23	chr19:56908000-56910600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr19:56908000-56913600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr19:56908000-56913600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr19:56908000-56914800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr19:56908200-56910400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr19:56908200-56911400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr19:56908200-56912400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr19:56908200-56913000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr19:56908200-56914600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr19:56908400-56910200	Strong transcription	HSMMtube	muscle
33	chr19:56908400-56911800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
34	chr19:56908400-56912000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr19:56908400-56912000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
36	chr19:56908400-56913600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr19:56908600-56910000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr19:56908600-56911000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr19:56908600-56911600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
40	chr19:56908600-56912200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr19:56908600-56913400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
42	chr19:56908800-56910000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr19:56908800-56910600	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr19:56908800-56911200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
45	chr19:56908800-56911200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
46	chr19:56908800-56911400	ZNF genes & repeats	Primary T cells from cord blood	blood
47	chr19:56908800-56911600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
48	chr19:56908800-56911600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr19:56908800-56911600	Strong transcription	Brain Cingulate Gyrus	brain
50	chr19:56908800-56911600	Strong transcription	Brain Hippocampus Middle	brain

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