Variant report

Variant	rs10401988
Chromosome Location	chr19:21219434-21219435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21217901..21220893-chr19:21222403..21225000,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10402207	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10406243	0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10406276	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10406390	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10407928	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10411360	0.83[AMR][1000 genomes]
rs10411471	0.90[YRI][hapmap]
rs10413561	0.83[AMR][1000 genomes]
rs10424613	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425562	0.83[AMR][1000 genomes]
rs10425664	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11880964	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13345905	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs28394595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28500793	0.83[AMR][1000 genomes]
rs28635135	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28858186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35569945	1.00[AMR][1000 genomes]
rs59498150	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7247708	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7248199	0.81[AFR][1000 genomes]
rs7250059	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531822	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537721	0.83[AMR][1000 genomes]
rs9941493	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv911411	chr19:21184533-21263518	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv578949	chr19:21190572-21244049	ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv960811	chr19:21200306-21371757	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21204200-21224400	Weak transcription	Liver	Liver
2	chr19:21204200-21230400	Weak transcription	Gastric	stomach
3	chr19:21204400-21224000	Weak transcription	Aorta	Aorta
4	chr19:21204400-21224400	Weak transcription	Pancreas	Pancrea
5	chr19:21204400-21227200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:21204400-21229200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr19:21204400-21231600	Weak transcription	Colonic Mucosa	Colon
8	chr19:21204400-21264800	Weak transcription	Right Ventricle	heart
9	chr19:21204600-21227800	Weak transcription	Brain Angular Gyrus	brain
10	chr19:21204600-21239800	Weak transcription	Colon Smooth Muscle	Colon
11	chr19:21205400-21222800	Weak transcription	Fetal Brain Male	brain
12	chr19:21206200-21223000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:21206200-21223600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr19:21206200-21226600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:21206200-21241600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr19:21206400-21220200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr19:21207200-21222800	Weak transcription	Fetal Kidney	kidney
18	chr19:21207200-21239400	Weak transcription	Hela-S3	cervix
19	chr19:21207400-21224200	Weak transcription	Spleen	Spleen
20	chr19:21207400-21226600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:21208600-21221200	Weak transcription	Fetal Intestine Small	intestine
22	chr19:21208600-21223000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr19:21208600-21230000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr19:21209200-21235600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr19:21209400-21221400	Weak transcription	Fetal Brain Female	brain
26	chr19:21210200-21232200	Weak transcription	K562	blood
27	chr19:21211200-21220000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr19:21211400-21221800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr19:21211400-21222800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr19:21211400-21235400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr19:21211600-21224400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr19:21211800-21221600	ZNF genes & repeats	GM12878-XiMat	blood
33	chr19:21211800-21228800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr19:21212000-21221400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr19:21212000-21226000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr19:21212000-21227400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr19:21212000-21228000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr19:21212000-21228200	Weak transcription	Brain Hippocampus Middle	brain
39	chr19:21212000-21241400	Weak transcription	Fetal Heart	heart
40	chr19:21212200-21223800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr19:21212400-21220400	Strong transcription	HSMM	muscle
42	chr19:21212400-21224400	Strong transcription	Dnd41	blood
43	chr19:21213400-21227000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr19:21213600-21222600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr19:21213600-21223000	Weak transcription	Brain Substantia Nigra	brain
46	chr19:21213800-21224800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr19:21214000-21230200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr19:21214200-21224400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr19:21215600-21219800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr19:21215600-21219800	Strong transcription	Fetal Thymus	thymus

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