Variant report

Variant	rs10424613
Chromosome Location	chr19:21206989-21206990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21204714..21207211-chr19:21209787..21213344,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10401988	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10402207	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10406243	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10406276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10406390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10407928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10411360	0.83[AMR][1000 genomes]
rs10413561	0.83[AMR][1000 genomes]
rs10425562	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10425664	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11880964	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13345905	0.83[AMR][1000 genomes]
rs28394595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28500793	0.83[AMR][1000 genomes]
rs28635135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28858186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35569945	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59498150	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7247708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7248199	0.85[AFR][1000 genomes]
rs7250059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531822	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537721	0.83[AMR][1000 genomes]
rs9941493	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv911411	chr19:21184533-21263518	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv578949	chr19:21190572-21244049	ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv960811	chr19:21200306-21371757	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21204200-21208000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr19:21204200-21210600	Weak transcription	Fetal Heart	heart
3	chr19:21204200-21224400	Weak transcription	Liver	Liver
4	chr19:21204200-21230400	Weak transcription	Gastric	stomach
5	chr19:21204400-21207200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr19:21204400-21208200	Weak transcription	Lung	lung
7	chr19:21204400-21210800	Weak transcription	Brain Substantia Nigra	brain
8	chr19:21204400-21213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr19:21204400-21213400	Weak transcription	Esophagus	oesophagus
10	chr19:21204400-21213800	Weak transcription	Psoas Muscle	Psoas
11	chr19:21204400-21224000	Weak transcription	Aorta	Aorta
12	chr19:21204400-21224400	Weak transcription	Pancreas	Pancrea
13	chr19:21204400-21227200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:21204400-21229200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr19:21204400-21231600	Weak transcription	Colonic Mucosa	Colon
16	chr19:21204400-21264800	Weak transcription	Right Ventricle	heart
17	chr19:21204600-21207000	Weak transcription	Fetal Intestine Small	intestine
18	chr19:21204600-21207800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr19:21204600-21211000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr19:21204600-21227800	Weak transcription	Brain Angular Gyrus	brain
21	chr19:21204600-21239800	Weak transcription	Colon Smooth Muscle	Colon
22	chr19:21204800-21207200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr19:21205000-21207200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr19:21205000-21207200	Enhancers	Stomach Mucosa	stomach
25	chr19:21205000-21210000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr19:21205000-21213200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr19:21205200-21207200	Genic enhancers	HSMM	muscle
28	chr19:21205400-21207200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr19:21205400-21208000	Weak transcription	Fetal Brain Female	brain
30	chr19:21205400-21208400	Strong transcription	A549	lung
31	chr19:21205400-21208400	ZNF genes & repeats	GM12878-XiMat	blood
32	chr19:21205400-21209400	Strong transcription	Fetal Stomach	stomach
33	chr19:21205400-21211200	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr19:21205400-21211600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr19:21205400-21211600	Strong transcription	Fetal Intestine Large	intestine
36	chr19:21205400-21222800	Weak transcription	Fetal Brain Male	brain
37	chr19:21205600-21207200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr19:21205600-21207200	Strong transcription	HUVEC	blood vessel
39	chr19:21205600-21208000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr19:21205600-21208600	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr19:21205600-21209200	Strong transcription	Placenta	Placenta
42	chr19:21205600-21210200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr19:21205600-21211000	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr19:21205600-21211000	Strong transcription	Brain Germinal Matrix	brain
45	chr19:21205600-21211200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr19:21205600-21211800	Strong transcription	Fetal Muscle Leg	muscle
47	chr19:21205600-21219200	Weak transcription	Small Intestine	intestine
48	chr19:21205800-21207200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr19:21205800-21208400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr19:21205800-21208400	Strong transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links