Variant report
| Variant | rs1040731 |
|---|---|
| Chromosome Location | chr14:63406938-63406939 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10137798 | 0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10140285 | 0.85[CEU][hapmap] |
| rs10141487 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1040728 | 0.85[CEU][hapmap] |
| rs11158461 | 0.83[EUR][1000 genomes] |
| rs11158463 | 0.85[CEU][hapmap] |
| rs1270032 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12894226 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17223741 | 0.90[CHD][hapmap] |
| rs17823765 | 1.00[CHB][hapmap] |
| rs17823837 | 1.00[CHB][hapmap] |
| rs17823873 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[ASN][1000 genomes] |
| rs1950571 | 0.85[CEU][hapmap] |
| rs1956025 | 0.84[CEU][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2355743 | 0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2356097 | 0.84[CEU][hapmap];0.80[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4899101 | 1.00[MEX][hapmap] |
| rs7143072 | 0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7157658 | 0.81[CEU][hapmap] |
| rs8018884 | 0.84[CEU][hapmap];1.00[MEX][hapmap] |
| rs991436 | 0.80[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527251 | chr14:63400786-64068806 | Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv520528 | chr14:63400786-64157117 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:63402800-63422600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
