Variant report

Variant	rs1956025
Chromosome Location	chr14:63388506-63388507
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10131676	0.89[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap]
rs10137798	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140285	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10141487	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10150127	0.83[CEU][hapmap]
rs1040731	0.84[CEU][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11158461	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158463	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1270032	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12894226	0.85[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950571	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1980556	0.84[CEU][hapmap]
rs2355743	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356097	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4426276	0.92[CEU][hapmap]
rs4899101	0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs6420893	0.87[CEU][hapmap]
rs6573464	0.92[CEU][hapmap]
rs6573466	0.83[GIH][hapmap]
rs7143072	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157658	0.96[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs8018884	0.89[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap]
rs991436	0.81[ASW][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1956025	WDR89	cis	cerebellum	SCAN
rs1956025	CHMP1B	trans	parietal	SCAN
rs1956025	IGF1R	trans	parietal	SCAN
rs1956025	HIF1A	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63388000-63388600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr14:63388200-63388600	Enhancers	Brain Inferior Temporal Lobe	brain

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