Variant report
| Variant | rs4899101 |
|---|---|
| Chromosome Location | chr14:63371748-63371749 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10131676 | 0.84[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap] |
| rs10137798 | 0.96[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10140285 | 0.96[CEU][hapmap];1.00[JPT][hapmap] |
| rs10141487 | 0.81[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs10150127 | 0.88[CEU][hapmap] |
| rs1040731 | 1.00[MEX][hapmap];0.81[EUR][1000 genomes] |
| rs11158461 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11158463 | 0.96[CEU][hapmap];1.00[JPT][hapmap] |
| rs12894226 | 0.81[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs1950571 | 0.96[CEU][hapmap];1.00[JPT][hapmap] |
| rs1956025 | 0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1980556 | 0.88[CEU][hapmap];0.81[AMR][1000 genomes] |
| rs2355743 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2356097 | 0.96[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4426276 | 0.96[CEU][hapmap];0.84[AMR][1000 genomes] |
| rs6420893 | 0.92[CEU][hapmap];0.85[AMR][1000 genomes] |
| rs6573464 | 0.96[CEU][hapmap];0.83[AMR][1000 genomes] |
| rs6573466 | 0.83[GIH][hapmap] |
| rs7143072 | 0.96[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7157658 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs8018884 | 0.96[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1042953 | chr14:63314591-63384260 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4899101 | HIF1A | cis | cerebellum | SCAN |
| rs4899101 | CHMP1B | trans | parietal | SCAN |
| rs4899101 | WDR89 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
