Variant report

Variant	rs10411928
Chromosome Location	chr19:51695477-51695478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10404091	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10404245	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10404590	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10405709	0.85[JPT][hapmap]
rs10405784	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10416576	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10419722	0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10421385	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10421852	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11084055	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11666927	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11667023	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11667167	0.84[EUR][1000 genomes]
rs11670380	0.85[EUR][1000 genomes]
rs11672116	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16982535	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17715691	0.82[EUR][1000 genomes]
rs34186776	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528093	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35203095	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35469086	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4802771	0.82[EUR][1000 genomes]
rs59266985	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67836621	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7254890	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7255660	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7255837	0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv962987	chr19:51692435-51697218	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51695000-51696000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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