Variant report
| Variant | rs7255660 |
|---|---|
| Chromosome Location | chr19:51696729-51696730 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10404091 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10404245 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10404590 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10405784 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10411928 | 0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10416576 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10419722 | 0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10421385 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10421852 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11084055 | 0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11666927 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11667023 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11667167 | 0.91[EUR][1000 genomes] |
| rs11672116 | 0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs16982535 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs34186776 | 0.83[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs34528093 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs35203095 | 0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35469086 | 0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs59266985 | 0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs67836621 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7254890 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7255837 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1066308 | chr19:51680133-52103974 | Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
| 2 | nsv544049 | chr19:51680133-52103974 | Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
| 3 | nsv962987 | chr19:51692435-51697218 | Weak transcription Enhancers | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:51696200-51702000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr19:51696400-51705400 | Weak transcription | Right Atrium | heart |
