Variant report

Variant	rs11666927
Chromosome Location	chr19:51686610-51686611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr19:51686300-51686660	NB4	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51686150..51688287-chr19:51697466..51699885,2	K562	blood:

Variant related genes	Relation type
SIGLEC20P	TF binding region
ENSG00000269072	TF binding region
ENSG00000268652	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10404091	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10404245	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10404590	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10405784	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10411928	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10416576	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10419722	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10421385	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10421852	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11084055	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11667023	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11670380	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11672116	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16982535	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17715691	0.82[EUR][1000 genomes]
rs34186776	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34528093	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35203095	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35469086	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4802771	0.85[EUR][1000 genomes]
rs59266985	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67836621	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7254890	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7255660	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7255837	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51684800-51687000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr19:51685000-51688600	Enhancers	Primary hematopoietic stem cells	blood
3	chr19:51685400-51687000	Weak transcription	Gastric	stomach
4	chr19:51685600-51687200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr19:51685800-51687000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:51685800-51687400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr19:51685800-51688600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr19:51685800-51689000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:51686400-51686800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr19:51686400-51691200	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links