Variant report

Variant	rs10415671
Chromosome Location	chr19:39489817-39489818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3859548	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs55785583	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56166490	1.00[ASN][1000 genomes]
rs73032408	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032437	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73047948	0.98[EUR][1000 genomes]
rs73047959	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73049875	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73049881	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8105813	1.00[ASN][1000 genomes]
rs8108019	1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10415671	FBXO27	cis	Esophagus Mucosa	GTEx
rs10415671	CTB-189B5.3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:39489400-39490000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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