Variant report

Variant	rs56166490
Chromosome Location	chr19:39504247-39504248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10415671	1.00[ASN][1000 genomes]
rs12151263	0.83[AMR][1000 genomes]
rs12151266	0.83[AMR][1000 genomes]
rs55773274	0.83[AMR][1000 genomes]
rs55785583	1.00[ASN][1000 genomes]
rs7248416	0.83[AMR][1000 genomes]
rs7248895	0.83[AMR][1000 genomes]
rs7255339	0.83[AMR][1000 genomes]
rs7258997	0.83[AMR][1000 genomes]
rs7259800	0.83[AMR][1000 genomes]
rs73032408	1.00[ASN][1000 genomes]
rs73032437	1.00[ASN][1000 genomes]
rs73047948	0.88[AMR][1000 genomes]
rs73047959	1.00[ASN][1000 genomes]
rs73049875	1.00[ASN][1000 genomes]
rs73049881	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8105813	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8108019	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs56166490	CTB-189B5.3	cis	Esophagus Mucosa	GTEx
rs56166490	FBXO27	cis	Esophagus Mucosa	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
2	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr19:39496600-39504400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr19:39496600-39515800	Weak transcription	Ovary	ovary
5	chr19:39498400-39516600	Weak transcription	A549	lung
6	chr19:39499400-39516600	Weak transcription	Brain Anterior Caudate	brain
7	chr19:39499800-39516800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr19:39500000-39515600	Weak transcription	Brain Substantia Nigra	brain
9	chr19:39501600-39514800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:39501800-39515800	Weak transcription	Adipose Nuclei	Adipose
11	chr19:39502000-39506800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr19:39502000-39515400	Weak transcription	Fetal Intestine Small	intestine
13	chr19:39502200-39515600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr19:39502400-39518000	Weak transcription	Aorta	Aorta
15	chr19:39503000-39515400	Weak transcription	Brain Hippocampus Middle	brain
16	chr19:39503400-39505400	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr19:39503600-39520200	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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