Variant report

Variant	rs55785583
Chromosome Location	chr19:39494551-39494552
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10415671	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12151263	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12151266	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs55773274	0.80[AMR][1000 genomes]
rs56166490	1.00[ASN][1000 genomes]
rs7248416	0.80[AMR][1000 genomes]
rs7248895	0.80[AMR][1000 genomes]
rs7255339	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7258997	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7259800	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73032408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73047948	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73047959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73049875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73049881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8105813	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8108019	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs55785583	FBXO27	cis	Esophagus Mucosa	GTEx
rs55785583	CTB-189B5.3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:39492000-39497600	Weak transcription	Placenta	Placenta
5	chr19:39494400-39494600	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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