Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1532901	0.86[CEU][hapmap]
rs1654520	0.92[CEU][hapmap];0.80[MEX][hapmap]
rs1654521	0.96[CEU][hapmap]
rs1654539	0.92[CEU][hapmap]
rs1654542	0.88[CEU][hapmap]
rs1654543	0.92[CEU][hapmap];0.80[MEX][hapmap]
rs1701915	0.92[CEU][hapmap]
rs1701946	0.88[CEU][hapmap]
rs1701947	0.88[CEU][hapmap];0.83[MEX][hapmap]
rs1722550	0.85[CEU][hapmap]
rs1722560	0.92[CEU][hapmap];0.84[MEX][hapmap]
rs2075802	0.96[CEU][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2569441	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2569478	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs268894	0.92[CEU][hapmap]
rs268898	0.96[CEU][hapmap]
rs2739433	1.00[YRI][hapmap]
rs3760738	0.87[ASW][hapmap];1.00[YRI][hapmap]
rs6509509	0.85[CEU][hapmap];0.80[MEX][hapmap]
rs952108	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs952109	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv912291	chr19:51505725-51537682	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10420303	LILRA1	cis	parietal	SCAN
rs10420303	RPL28	cis	parietal	SCAN
rs10420303	LILRB1	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51506000-51509200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr19:51506000-51509600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:51506200-51509600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr19:51506200-51509600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr19:51506400-51509400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr19:51506400-51509400	Weak transcription	HMEC	breast
7	chr19:51506400-51509600	Weak transcription	NHEK	skin
8	chr19:51507200-51512400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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