Variant report

Variant	rs1532901
Chromosome Location	chr19:51498129-51498130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51496140..51499135-chr19:51503262..51506454,3	MCF-7	breast:
2	chr19:51480632..51483251-chr19:51496429..51498251,2	K562	blood:

Variant related genes	Relation type
ENSG00000129455	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10420303	0.86[CEU][hapmap]
rs1612902	1.00[ASN][1000 genomes]
rs1627239	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1654519	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1654520	0.86[CEU][hapmap]
rs1654521	0.83[CEU][hapmap]
rs1654539	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1654542	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1654543	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1654558	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1654559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1701914	1.00[ASN][1000 genomes]
rs1701915	0.87[CEU][hapmap]
rs1701916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1701919	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1701920	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1701921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1701947	0.85[CEU][hapmap]
rs1701948	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs1722538	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1722545	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1722546	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1722550	0.81[CHB][hapmap]
rs1722559	1.00[ASN][1000 genomes]
rs1722560	0.85[CEU][hapmap]
rs1722561	1.00[ASN][1000 genomes]
rs1722562	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1722563	1.00[ASN][1000 genomes]
rs1897605	1.00[ASN][1000 genomes]
rs1897606	1.00[ASN][1000 genomes]
rs2075802	0.90[CEU][hapmap];0.87[JPT][hapmap]
rs2222554	0.81[CEU][hapmap];0.80[JPT][hapmap]
rs2569441	0.86[CEU][hapmap]
rs2569456	0.85[CEU][hapmap]
rs2569478	0.81[CEU][hapmap]
rs2659071	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2659074	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2659095	0.85[CEU][hapmap]
rs2659096	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs268894	0.87[CEU][hapmap]
rs268895	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268898	0.86[CEU][hapmap]
rs268899	0.95[CEU][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6509509	0.86[CEU][hapmap]
rs906190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs952108	0.82[CEU][hapmap]
rs952109	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51496400-51499200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr19:51496600-51499200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr19:51496600-51502000	Weak transcription	NHEK	skin
4	chr19:51496600-51503000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr19:51498000-51502200	Weak transcription	HMEC	breast
6	chr19:51498000-51503000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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