Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10420303	0.92[CEU][hapmap]
rs1532901	0.87[CEU][hapmap]
rs1612902	0.89[EUR][1000 genomes]
rs1654520	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1654521	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1654539	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1654542	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1654543	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1701914	0.95[EUR][1000 genomes]
rs1701946	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1701947	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1722547	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1722559	0.95[EUR][1000 genomes]
rs1722560	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1722561	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1722563	0.89[EUR][1000 genomes]
rs1897605	0.89[EUR][1000 genomes]
rs1897606	0.89[EUR][1000 genomes]
rs2075802	0.96[CEU][hapmap]
rs2569478	0.88[CEU][hapmap]
rs268893	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs268894	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs268896	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs268897	0.89[EUR][1000 genomes]
rs268898	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6509509	0.84[CEU][hapmap]
rs906191	0.89[EUR][1000 genomes]
rs952108	0.89[CEU][hapmap]
rs952109	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51496600-51502000	Weak transcription	NHEK	skin
2	chr19:51496600-51503000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr19:51498000-51502200	Weak transcription	HMEC	breast
4	chr19:51498000-51503000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:51499200-51500400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr19:51499200-51501600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr19:51499800-51503200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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