Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1532901	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1627239	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1654520	0.99[ASN][1000 genomes]
rs1654521	0.97[ASN][1000 genomes]
rs1654559	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1701916	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1701919	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1701920	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1701921	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1701946	0.86[ASN][1000 genomes]
rs1701948	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1722538	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1722545	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1722546	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1722560	0.89[ASN][1000 genomes]
rs1722562	0.82[EUR][1000 genomes]
rs2659071	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2659074	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs268893	0.99[ASN][1000 genomes]
rs268894	0.99[ASN][1000 genomes]
rs268895	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs268896	0.99[ASN][1000 genomes]
rs268897	0.99[ASN][1000 genomes]
rs268898	0.97[ASN][1000 genomes]
rs268899	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs906190	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs906191	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064207	chr19:51474525-51497278	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51487400-51494200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr19:51487600-51492800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:51487600-51493800	Weak transcription	HMEC	breast

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