Variant report

Variant	rs1722562
Chromosome Location	chr19:51500192-51500193
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1532901	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1612902	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1627239	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1654519	0.82[EUR][1000 genomes]
rs1654539	0.99[ASN][1000 genomes]
rs1654542	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1654543	0.99[ASN][1000 genomes]
rs1654558	0.95[ASN][1000 genomes]
rs1654559	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1701914	0.99[ASN][1000 genomes]
rs1701916	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1701919	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1701920	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1701921	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1722538	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1722545	0.82[EUR][1000 genomes]
rs1722546	0.82[EUR][1000 genomes]
rs1722559	0.99[ASN][1000 genomes]
rs1722561	0.99[ASN][1000 genomes]
rs1722563	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1897605	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1897606	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2659071	0.82[EUR][1000 genomes]
rs2659074	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs268895	0.82[EUR][1000 genomes]
rs268897	0.85[EUR][1000 genomes]
rs268899	0.82[EUR][1000 genomes]
rs906190	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs906191	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51496600-51502000	Weak transcription	NHEK	skin
2	chr19:51496600-51503000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr19:51498000-51502200	Weak transcription	HMEC	breast
4	chr19:51498000-51503000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:51499200-51500400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr19:51499200-51501600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr19:51499800-51503200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links