Variant report

Variant	rs10424100
Chromosome Location	chr19:37433393-37433394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10401417	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10404981	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10405238	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10407712	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10408534	0.85[ASN][1000 genomes]
rs10409206	0.83[ASN][1000 genomes]
rs10410594	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10411251	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10412863	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10416960	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10420859	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12710052	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12977971	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12981965	0.86[ASN][1000 genomes]
rs13345489	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1551025	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1623097	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1624293	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1644664	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1644701	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1667357	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1667359	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16971850	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17639910	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17707101	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2595552	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28495495	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28542490	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28555503	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28608841	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28655720	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34791663	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35881914	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3816390	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3816391	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4806377	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4806380	0.86[AFR][1000 genomes]
rs4806383	0.86[AFR][1000 genomes]
rs4806386	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62113193	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62115612	0.83[AFR][1000 genomes]
rs62115615	0.82[ASN][1000 genomes]
rs6510572	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71266562	0.86[ASN][1000 genomes]
rs71356024	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7249013	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7250498	0.86[ASN][1000 genomes]
rs7251087	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7252797	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8112709	0.91[EUR][1000 genomes]
rs997516	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
14	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
16	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37408200-37436400	Weak transcription	Fetal Thymus	thymus
2	chr19:37408200-37440600	Weak transcription	Stomach Mucosa	stomach
3	chr19:37408400-37440600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:37408600-37439600	Weak transcription	Fetal Heart	heart
5	chr19:37409000-37444800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:37409000-37447400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:37415800-37444600	ZNF genes & repeats	Liver	Liver
8	chr19:37419400-37447400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:37420600-37443000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr19:37420600-37447400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr19:37420600-37447600	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr19:37426800-37438200	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr19:37427200-37433800	Strong transcription	Dnd41	blood
14	chr19:37427200-37437200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:37427200-37441600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
16	chr19:37427400-37437200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
17	chr19:37427400-37437400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr19:37427600-37436800	Strong transcription	Stomach Smooth Muscle	stomach
19	chr19:37427800-37434400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr19:37428200-37434400	Strong transcription	HSMM	muscle
21	chr19:37428200-37434800	Strong transcription	Brain Hippocampus Middle	brain
22	chr19:37428200-37435000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr19:37428200-37435000	Weak transcription	Gastric	stomach
24	chr19:37428400-37433600	Weak transcription	Right Ventricle	heart
25	chr19:37428600-37433800	Weak transcription	Fetal Brain Female	brain
26	chr19:37428800-37436200	Weak transcription	Fetal Muscle Leg	muscle
27	chr19:37428800-37438200	Weak transcription	Brain Germinal Matrix	brain
28	chr19:37429800-37433800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr19:37430200-37435800	Weak transcription	Fetal Brain Male	brain
30	chr19:37430200-37436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr19:37430200-37436400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr19:37430200-37438000	Weak transcription	HUVEC	blood vessel
33	chr19:37430400-37433600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr19:37430400-37433600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr19:37430400-37433600	Weak transcription	HSMMtube	muscle
36	chr19:37430400-37433800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr19:37430400-37434000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr19:37430400-37438400	Weak transcription	Colonic Mucosa	Colon
39	chr19:37430800-37434600	Weak transcription	Aorta	Aorta
40	chr19:37430800-37434600	Weak transcription	Left Ventricle	heart
41	chr19:37430800-37434600	Weak transcription	Psoas Muscle	Psoas
42	chr19:37430800-37443200	Weak transcription	Pancreas	Pancrea
43	chr19:37431000-37433600	Weak transcription	Fetal Intestine Large	intestine
44	chr19:37431000-37433800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr19:37431000-37436000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr19:37431000-37438200	Weak transcription	NH-A	brain
47	chr19:37431000-37439000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr19:37431200-37433800	Weak transcription	Colon Smooth Muscle	Colon
49	chr19:37431200-37438200	Weak transcription	Fetal Kidney	kidney
50	chr19:37431400-37433800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links